PUMI.pipelines package

• PUMI.pipelines.anat package
  • PUMI.pipelines.anat.anat2mni module
    • anat2mni_ants()
    • anat2mni_ants_hardcoded()
    • anat2mni_fsl()
    • qc()
  • PUMI.pipelines.anat.anat_proc module
    • anat_proc()
  • PUMI.pipelines.anat.func_to_anat module
    • func2anat()
    • func2anat_qc()
  • PUMI.pipelines.anat.segmentation module
    • bet_fsl()
    • bet_hd()
    • defacing()
    • pydeface_wrapper()
    • qc_segmentation()
    • qc_tissue_segmentation()
    • tissue_segmentation_fsl()
• PUMI.pipelines.dwi package
• PUMI.pipelines.func package
  • Subpackages
    • PUMI.pipelines.func.info package
  • PUMI.pipelines.func.compcor module
    • anat_noise_roi()
    • compcor()
    • compcor_qc()
  • PUMI.pipelines.func.concat module
    • concat()
  • PUMI.pipelines.func.data_censorer module
    • datacens_workflow_threshold()
    • qc_datacens()
  • PUMI.pipelines.func.deconfound module
    • despiking_afni()
    • motion_correction_mcflirt()
    • nuisance_removal()
    • qc()
    • qc_motion_correction_mcflirt()
    • qc_nuisance_removal()
  • PUMI.pipelines.func.func_proc module
    • func_proc_despike_afni()
  • PUMI.pipelines.func.temporal_filtering module
    • qc_temporal_filtering()
    • temporal_filtering()
• PUMI.pipelines.multimodal package
  • PUMI.pipelines.multimodal.image_manipulation module
    • get_info()
    • pick_volume()
    • timecourse2png()
    • vol2png()